Index

A

actcorrmap() (in module imfun.fnmap) adaptive_medianf() (in module imfun.filt) adaptive_threshold() (in module imfun.bwmorph) addpoint() (imfun.cluster.Cluster method) apearson() (in module imfun.cluster) ar1() (in module imfun.lib)

arreq() (in module imfun.cluster) as3darray() (imfun.fseq.FrameSequence method) asiter() (imfun.fseq.FrameSequence method) aslist() (imfun.fseq.FrameSequence method) auto_threshold() (in module imfun.lib) avg_eds() (in module imfun.fnmap)

B

baseline_als() (in module imfun.filt) (in module imfun.lib) bounce() (in module imfun.lib)

bspline_smooth() (in module imfun.filt)

C

centroid() (imfun.cluster.Cluster method) CircleROI (class in imfun.ui) cityblock() (in module imfun.cluster) clip_and_rescale() (in module imfun.lib) Cluster (class in imfun.cluster) cluster2array() (in module imfun.cluster) cluster_map_permutation() (in module imfun.som) connect() (imfun.ui.DraggableObj method) connectivity_graph() (in module imfun.mvm)

contiguous_regions() (in module imfun.bwmorph) converge_square() (in module imfun.cluster) corrlag() (in module imfun.fnmap) csq_find_rois() (in module imfun.cluster) csqroi2point() (in module imfun.cluster) cwt_freqmap() (in module imfun.fnmap) cwt_iter() (in module imfun.fnmap) cwtmap() (in module imfun.fnmap)

D

data_percentile() (imfun.fseq.FrameSequence method) data_range() (imfun.fseq.FrameSequence method) dbscan() (in module imfun.cluster) dbscan_old() (in module imfun.cluster) deblend_all() (in module imfun.mvm) deblend_node() (in module imfun.mvm) decompose() (in module imfun.atrous) decompose1d() (in module imfun.atrous) decompose1d_numpy() (in module imfun.atrous) decompose1d_weave() (in module imfun.atrous) decompose2d() (in module imfun.atrous) decompose2d_numpy() (in module imfun.atrous) decompose2d_weave() (in module imfun.atrous)

decompose3d() (in module imfun.atrous) decompose3d_numpy() (in module imfun.atrous) decompose3d_weave() (in module imfun.atrous) detrend() (in module imfun.atrous) DFoF() (in module imfun.atrous) (in module imfun.lib) DFoSD() (in module imfun.atrous) (in module imfun.lib) diam() (imfun.cluster.Cluster method) distance_regions() (in module imfun.bwmorph) distance_regions_centra() (in module imfun.bwmorph) distortion() (imfun.cluster.Cluster method) distortion_mean() (imfun.cluster.Cluster method) DraggableObj (class in imfun.ui)

E

embedded_to_full() (in module imfun.lib) (in module imfun.mvm) embedding() (in module imfun.lib) (in module imfun.mvm) estimate_sigma() (in module imfun.atrous) estimate_sigma_kclip() (in module imfun.atrous) estimate_sigma_mad() (in module imfun.atrous) eu_dist() (in module imfun.synthdata)

eu_dist2d() (in module imfun.lib) euclidean() (in module imfun.cluster) export_img() (imfun.fseq.FrameSequence method) export_movie_anim() (imfun.fseq.FrameSequence method) extrema2() (in module imfun.lib)

F

farthest_linkage() (imfun.cluster.Cluster method) fastica() (in module imfun.pica) fftmap() (in module imfun.fnmap) filter_density() (in module imfun.bwmorph) filter_mask() (in module imfun.bwmorph) filter_shape_regions() (in module imfun.bwmorph) filter_size_regions() (in module imfun.bwmorph) find_objects() (in module imfun.mvm) flcompose() (in module imfun.fnutils) flcompose2() (in module imfun.fnutils)

fnchain() (in module imfun.fnutils) fniter() (in module imfun.fnutils) frame_idx() (imfun.fseq.FrameSequence method) frame_slices() (imfun.fseq.FrameSequence method) frames() (imfun.fseq.FSeq_arr method) FrameSequence (class in imfun.fseq) framewise_find_objects() (in module imfun.mvm) FSeq_arr (class in imfun.fseq) fseq_from_glob() (in module imfun.fseq) FSeq_imgleic (class in imfun.fseq)

G

gauss_blur() (in module imfun.filt) gauss_kern() (in module imfun.filt) gauss_kern1d() (in module imfun.filt) gauss_smooth() (in module imfun.filt)

get_structures() (in module imfun.mvm) get_zview() (imfun.ui.CircleROI method) glue_adjacent_regions() (in module imfun.bwmorph)

I

ifnot() (in module imfun.lib) imfun.atrous (module) imfun.bwmorph (module) imfun.cluster (module) imfun.filt (module) imfun.fnmap (module) imfun.fnutils (module) imfun.fseq (module) imfun.leica (module) imfun.lib (module)

imfun.mvm (module) imfun.pica (module) imfun.som (module) imfun.synthdata (module) imfun.ui (module) img_getter() (in module imfun.fseq) imresize() (in module imfun.lib) isseq() (in module imfun.fnmap) iter_files() (in module imfun.fseq)

K

kalman_stack_filter() (in module imfun.filt)

kmeans1() (in module imfun.cluster)

L

land() (in module imfun.lib) length() (imfun.fseq.FrameSequence method) LinkableObj (class in imfun.mvm)

loc_std() (in module imfun.atrous) locations() (in module imfun.atrous) (in module imfun.bwmorph) (in module imfun.cluster) locextr() (in module imfun.lib)

M

ma2d() (in module imfun.lib) majority() (in module imfun.bwmorph) make_grid() (in module imfun.cluster) mask2points() (in module imfun.cluster) mask2pointsr() (in module imfun.cluster) mask4overlay() (in module imfun.lib) mask4overlay2() (in module imfun.lib) mask_num_std() (in module imfun.lib) mask_reduce() (imfun.fseq.FrameSequence method) mass() (imfun.cluster.Cluster method)

mavg_DFoF() (in module imfun.filt) mavg_DFoSD() (in module imfun.filt) max_project() (imfun.fseq.FrameSequence method) mc_levels() (in module imfun.lib) mean_frame() (imfun.fseq.FrameSequence method) meanactmap() (in module imfun.fnmap) MH_onoff() (in module imfun.fnmap) minkowski() (in module imfun.cluster) move() (imfun.ui.CircleROI method) MVMNode (class in imfun.mvm)

N

n_random_locs() (in module imfun.lib) neighbours() (in module imfun.bwmorph)

neighbours_2() (in module imfun.bwmorph) neighbours_x() (in module imfun.bwmorph)

O

open_seq() (in module imfun.fseq)

opening_of_closing() (in module imfun.filt)

P

pca() (in module imfun.pica) pearson() (in module imfun.cluster) pipeline() (imfun.fseq.FrameSequence method)

pix_iter() (imfun.fseq.FrameSequence method) (imfun.fseq.FSeq_arr method) plot_csq_rois() (in module imfun.cluster) pw_transform() (imfun.fseq.FrameSequence method)

R

rec_atrous() (in module imfun.atrous) RegionND (class in imfun.bwmorph)

regions_overlap() (in module imfun.bwmorph) rescale() (in module imfun.lib)

S

set_points() (imfun.cluster.Cluster method) shape() (imfun.fseq.FrameSequence method) simple_corrlag() (in module imfun.fnmap) smooth() (in module imfun.atrous) softmask_reduce() (imfun.fseq.FrameSequence method) som1() (in module imfun.som)

sorted_file_names() (in module imfun.fseq) spearman() (in module imfun.cluster) spike() (in module imfun.synthdata) st_ica() (in module imfun.pica) std() (imfun.fseq.FrameSequence method)

T

take() (in module imfun.fnutils) tanh_step() (in module imfun.fnmap) test_kalman_stack_filter() (in module imfun.filt) ticks_to_ms() (in module imfun.leica)

time_project() (imfun.fseq.FrameSequence method) trampoline() (in module imfun.lib) translate() (in module imfun.ui)

U

unite_2regions() (in module imfun.bwmorph)

update() (imfun.cluster.Cluster method)

V

valid_loc() (in module imfun.bwmorph)

VesselContours (class in imfun.ui)

W

wavelet_denoise() (in module imfun.atrous) with_time() (in module imfun.lib)

with_time_dec() (in module imfun.lib)

X

xcorrdist() (in module imfun.cluster)

xcorrmap() (in module imfun.fnmap)

Z

zupsample() (in module imfun.atrous)